Banner

Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs868987 chr6:28110148 A/G BTN3A2 chr6:26365387-26378548:+ 0.32 6.75 4.4E-11 Box Plot
THCA rs869249 chr7:66387485 C/T CCT6P1 chr7:65216129-65228341:+ 0.43 6.75 4.26E-11 Box Plot
THCA rs869840 chr2:101131552 C/T LOC285359 chr3:101431278-101432259:+ 0.35 6.73 4.91E-11 Box Plot
THCA rs870943 chr2:132187123 T/C CCDC74B chr2:130896860-130902707:- 0.38 6.93 1.4E-11 Box Plot
THCA rs876143 chr2:101116571 T/C LOC285359 chr3:101431278-101432259:+ 0.33 6.58 1.27E-10 Box Plot
THCA rs876743 chr7:66375804 C/G CCT6P1 chr7:65216129-65228341:+ 0.43 6.72 5.03E-11 Box Plot
THCA rs877636 chr12:56480583 G/A RPS26P11 chrX:71264395-71264742:+ -0.49 -8.83 1.98E-17 Box Plot
THCA rs8944 chr8:11696492 A/C SGK223 chr8:8175258-8244008:- -0.38 -6.29 7.08E-10 Box Plot
THCA rs895696 chr8:3244615 A/G CSMD1 chr8:2792875-4852494:- -0.33 -6.33 5.73E-10 Box Plot
THCA rs902410 chr6:26664053 C/T ZNF322B chr9:99957633-99961910:- 0.73 15.21 6.48E-43 Box Plot
THCA rs903519 chr3:23274625 T/C PRDM5 chr4:121606074-121844025:- -0.22 -5.9 6.8E-9 Box Plot
THCA rs905453 chr3:125733003 A/G ROPN1 chr3:123687368-123711025:- -0.34 -6 3.89E-9 Box Plot
THCA rs905454 chr3:125733125 C/T ROPN1 chr3:123687368-123711025:- -0.34 -5.96 4.78E-9 Box Plot
THCA rs905455 chr3:125743671 T/C ROPN1 chr3:123687368-123711025:- -0.33 -5.93 5.66E-9 Box Plot
THCA rs905501 chr8:3244237 C/T CSMD1 chr8:2792875-4852494:- -0.33 -6.31 6.48E-10 Box Plot